This comes up from time to time.. no hotels with shuttles from airport as we have either rapid transit.. Canada Line which is cheap& effecient and direct to downtown or cabs which are also relatively inexpensive.
This came up last season and I think there are 2 hotels that offer shuttle to cruise terminal but as it's a max $10 -$15 cab ride from just about any hotel downtown this wouldn't be the criteria I'd use to find a hotel. The downtown is very compact and walkable with good transit and the cruise terminal is right downtown.
The Comfort Inn at the airport has a package: comfortinnvancouver.com/yvr-hotel-packages
The Travelodge at the airport has a package: http://www.travelodge.ivancouver.com/
You would enjoy staying in downtown Vancouver better and just taking a cab for 10 blocks or so - at least to Canada Place, farther if you're departing from Ballantyne Pier.
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