From Wikipedia, the free encyclopedia
Gene Expression Omnibus (GEO ) is a database for gene expression profiling and RNA methylation profiling managed by the National Center for Biotechnology Information (NCBI).[1] These high-throughput screening genomics data are derived from microarray or RNA-Seq experimental data.[2] These data need to conform to the minimum information about a microarray experiment (MIAME) format.[3]
Glossary [ edit ]
Abbreviation
Description
GDS
DataSet accession
GPL
Platform accession
GSE
Series accession
GSM
Sample accession
References [ edit ]
^ a b Edgar, R; Domrachev, M; Lash, AE (1 January 2002). "Gene Expression Omnibus: NCBI gene expression and hybridization array data repository" . Nucleic Acids Research . 30 (1): 207–10. doi :10.1093/nar/30.1.207 . PMC 99122 . PMID 11752295 .
^ Barrett, T; Wilhite, SE; Ledoux, P; Evangelista, C; Kim, IF; Tomashevsky, M; Marshall, KA; Phillippy, KH; Sherman, PM; Holko, M; Yefanov, A; Lee, H; Zhang, N; Robertson, CL; Serova, N; Davis, S; Soboleva, A (January 2013). "NCBI GEO: archive for functional genomics data sets--update" . Nucleic Acids Research . 41 (Database issue): D991-5. doi :10.1093/nar/gks1193 . PMC 3531084 . PMID 23193258 .
^ Brazma, A; Hingamp, P; Quackenbush, J; Sherlock, G; Spellman, P; Stoeckert, C; Aach, J; Ansorge, W; Ball, CA; Causton, HC; Gaasterland, T; Glenisson, P; Holstege, FC; Kim, IF; Markowitz, V; Matese, JC; Parkinson, H; Robinson, A; Sarkans, U; Schulze-Kremer, S; Stewart, J; Taylor, R; Vilo, J; Vingron, M (December 2001). "Minimum information about a microarray experiment (MIAME)-toward standards for microarray data" . Nature Genetics . 29 (4): 365–71. doi :10.1038/ng1201-365 . PMID 11726920 . S2CID 6994467 .
Databases GenBank ,
PubMed ,
PubMed Central ,
Conserved Domain Database ,
dbSNP ,
Histone Database ,
Online Mendelian Inheritance in Man ,
Molecular Modeling Database ,
GenBank ,
NCBI Epigenomics ,
Entrez ,
RefSeq ,
Univec ,
Gene Expression Omnibus people